PromptedVisions

Create New Workflow

Configure and start a new AI-powered research workflow

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Research Documents

Upload research papers (PDF) to analyze and extract molecular data for hypothesis generation

Drag & drop PDF files here, or click to browse

Upload research papers for molecular extraction and analysis

Note: Uploaded papers will be analyzed to extract molecular structures, research context, and experimental data for AI-powered hypothesis generation and workflow automation.

11-Stage AI Research Workflow

Your uploaded paper will be processed through the following automated stages

Stage 1
Document Processing

PDF extraction, text parsing, metadata extraction (10-30s)

Stage 2
Molecule Extraction

AI identifies proteins, genes, compounds, drugs via NER (30-60s)

Stage 3
Pathway Analysis

Maps biological pathways using KEGG, Reactome databases (1-2 min)

Stage 4
Key Findings

Extracts main conclusions, methods, statistical results (1-2 min)

Stage 5
Research Gaps

AI identifies unstudied areas and research opportunities (1-2 min)

Stage 6
Hypothesis Generation

AI generates 5-7 testable hypotheses from extracted data (2-3 min)

Stage 7
AlphaFold Structure

3D protein structure prediction using AI (3-5 min, optional)

Stage 8
Molecular Docking

Protein-ligand binding prediction and analysis (2-4 min, optional)

Stage 9
Protocol Generation

Wet lab experimental protocols with detailed procedures (30-60s, optional)

Stage 10
Results Prediction

ML-powered experimental outcome prediction with statistics (20-40s, optional)

Stage 11
Paper Publication

Publication-ready manuscript with DOI and citations (2-3 min)

Basic Information

Auto-filled from your uploaded paper or customize manually

Extracted from: Paper title, main research focus, key molecular targets identified

Extracted from: Abstract, introduction, key findings, experimental methods, molecular data from your paper

✨ Phase 1 Quality Improvements Active

Hypothesis Generation
5-7 hypotheses guaranteed
Previously: 1 hypothesis
Performance
<2.5 min paper generation
60% faster than before
Journal Compliance
✓ Word limits enforced
Nature, Science, Cell formats

Journal Format

Select the target journal format for manuscript generation

Optional Analyses

Select additional computational analyses to include in your workflow

Predict 3D protein structures using AI for top molecular targets

AutoDock Vina, QuickVina 2, and Vina-GPU for protein-ligand binding prediction

Generate detailed wet lab experimental protocols for validation

AI-powered prediction of experimental outcomes with visualizations

Automatically generate DOI and publication package after peer review (Enabled by default)

Ready to start?

Estimated time: 6-8 min (basic) | 15-20 min (with AlphaFold+Docking) | 20-25 min (all features)